STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF05300.1Outer membrane receptor proteins, mostly Fe transport. (930 aa)    
Predicted Functional Partners:
SEF05291.1
Hypothetical protein.
     0.915
SEF09325.1
TonB family C-terminal domain-containing protein.
  
   0.499
SEF05309.1
Uncharacterized protein.
       0.444
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.430
SEE52537.1
TonB family C-terminal domain-containing protein.
   
   0.430
SEF03835.1
Outer membrane transport energization protein TonB.
   
   0.430
SEF09316.1
TonB family C-terminal domain-containing protein.
   
   0.430
SEE83885.1
Hypothetical protein.
  
 
   0.425
SEE34390.1
Starch-binding associating with outer membrane.
  
 
   0.420
SEE28059.1
Carbohydrate family 9 binding domain-like.
  
     0.414
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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