STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF05658.1Indolepyruvate ferredoxin oxidoreductase beta subunit. (199 aa)    
Predicted Functional Partners:
SEE26533.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.999
SEF05650.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 0.992
SEE26687.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 
 0.943
SEE26633.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 0.885
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
 
 0.797
SEE24419.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
  
 
 0.796
SEE23855.1
Allosteric NADP-dependent malic enzyme.
    
 0.793
SEE82511.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.792
SEE91545.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
     
 0.732
SEF08050.1
3-hydroxyacyl-CoA dehydrogenase.
    
 0.710
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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