STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF05959.1Predicted dithiol-disulfide isomerase, DsbA family. (215 aa)    
Predicted Functional Partners:
SEE47219.1
Arsenate reductase; Belongs to the ArsC family.
   
   0.821
SEE69314.1
Arsenate reductase; Belongs to the ArsC family.
   
   0.821
SEF05968.1
Cholesterol oxidase.
       0.599
SEF05950.1
Uncharacterized conserved protein, DUF302 family.
       0.553
SEE74461.1
NAD(P)H-dependent FMN reductase.
  
    0.520
SEE26271.1
Hemoglobin.
  
  
 0.458
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
   0.441
SEF05979.1
TolB amino-terminal domain-containing protein.
       0.438
SEE86051.1
Hypothetical protein.
  
 
 0.409
SEE94832.1
Hypothetical protein.
  
 
 0.409
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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