STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF07905.1Superoxide dismutase, Cu-Zn family. (200 aa)    
Predicted Functional Partners:
SEE58188.1
Cu2+-exporting ATPase.
   
 0.981
SEE44285.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.876
SEE58153.1
AraC-type DNA-binding protein.
  
 0.860
SEE30730.1
Glycine/D-amino acid oxidase.
  
 
 
 0.856
SEE55637.1
Copper chaperone CopZ.
   
 0.842
SEE24107.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
 
 0.771
SEE24158.1
Cytochrome c oxidase subunit 2.
    
   0.736
SEF07981.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
  
 0.736
SEE20176.1
Uncharacterized protein.
    
   0.644
SEE23381.1
Cytochrome c oxidase subunit 3.
    
   0.644
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.