STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF07736.1TonB-dependent Receptor Plug Domain. (788 aa)    
Predicted Functional Partners:
SEF07725.1
Protein of unknown function.
 
     0.951
SEF07747.1
Hypothetical protein.
       0.659
SEF09316.1
TonB family C-terminal domain-containing protein.
  
   0.567
SEE99903.1
Phosphoribosylformylglycinamidine cyclo-ligase.
  
     0.557
SEE19245.1
AsmA family protein.
  
     0.522
SEE85644.1
Membrane protein YfhO.
  
     0.522
SEE78560.1
Hypothetical protein.
  
     0.510
SEF03835.1
Outer membrane transport energization protein TonB.
  
   0.502
SEE70715.1
Protein of unknown function.
  
     0.490
SEE69676.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
      0.479
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.