STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI21735.1PAS domain-containing protein. (229 aa)    
Predicted Functional Partners:
SFJ75653.1
PAS domain-containing protein.
  
    0.864
SFI21761.1
TIGR00255 family protein.
       0.720
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.720
SFI21815.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
       0.720
SFI58501.1
Type III flagellar switch regulator (C-ring) FliN C-term.
  
    0.709
SFJ00451.1
MJ0042 family finger-like domain-containing protein.
  
     0.690
SFJ66584.1
Hypothetical protein.
  
     0.675
SFJ11998.1
Serine/threonine-protein kinase RsbW.
  
    0.669
SFJ61357.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.617
SFI63527.1
Hint domain-containing protein.
  
    0.613
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.