STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI29340.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (504 aa)    
Predicted Functional Partners:
SFI29277.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SFI29310.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SFI29377.1
Cholesterol transport system auxiliary component.
 
  0.988
SFI30441.1
STAS domain-containing protein.
  
  0.932
SFJ11966.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  0.932
SFJ34903.1
Chemotaxis protein MotB.
   
   0.863
SFI29212.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
   
   0.813
SFI29244.1
Carbamate kinase; Belongs to the carbamate kinase family.
       0.773
SFI29150.1
Uncharacterized membrane protein YfcC, ion transporter superfamily.
       0.675
arcA
Arginine deiminase.
       0.675
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
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