STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI33666.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (325 aa)    
Predicted Functional Partners:
SFI33695.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.991
SFI33725.1
TRAP transporter, DctM subunit.
 
 
  0.990
SFI33993.1
TRAP transporter, 4TM/12TM fusion protein.
     
  0.900
SFI33756.1
Hypothetical protein.
 
     0.893
SFI33636.1
D-amino-acid dehydrogenase.
 
     0.824
SFI33608.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.514
SFI33581.1
Heparinase II/III-like protein.
       0.459
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.