STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI34832.1Homogentisate 1,2-dioxygenase. (453 aa)    
Predicted Functional Partners:
SFI86374.1
4-hydroxyphenylpyruvate dioxygenase.
 
 0.996
SFI34714.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
  
 0.957
SFI34681.1
Protein of unknown function.
 
     0.956
SFI34777.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.950
SFI34802.1
Fumarylacetoacetate (FAA) hydrolase.
 
  
 0.950
SFI34855.1
Transcriptional regulator, MarR family.
 
     0.893
SFJ33108.1
methylmalonyl-CoA epimerase.
  
 0.826
SFI55015.1
Protein of unknown function.
  
 0.785
SFI55045.1
Protein of unknown function.
  
 0.785
SFI34744.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.775
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.