STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI88320.1Tight adherence protein C. (326 aa)    
Predicted Functional Partners:
SFI88278.1
Tight adherence protein B.
 
  
0.999
SFI88196.1
Pilus assembly protein CpaE.
 
  
 0.990
SFI88240.1
Pilus assembly protein CpaF.
 
  
 0.989
SFI88072.1
Pilus assembly protein CpaB.
 
  
 0.979
SFI88111.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.962
SFI88486.1
Hypothetical protein.
 
    0.958
SFI88363.1
Tetratricopeptide repeat-containing protein.
 
  
 0.949
SFI88405.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
  
 0.938
SFJ42776.1
Flagellar protein FlbT.
   
    0.924
SFI88447.1
Prepilin peptidase CpaA.
 
   
 0.922
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.