STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ33108.1methylmalonyl-CoA epimerase. (153 aa)    
Predicted Functional Partners:
SFI48639.1
methylmalonyl-CoA mutase.
 
  
 0.993
SFJ38624.1
(R)-ethylmalonyl-CoA mutase.
 
  
 0.977
SFI49013.1
propionyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.974
SFI48758.1
Biotin carboxyl carrier protein/biotin carboxylase.
 
 
 0.948
SFJ38561.1
crotonyl-CoA carboxylase/reductase.
     
 0.900
SFJ29223.1
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
  
 
 0.885
SFJ33072.1
Predicted secreted protein.
       0.874
SFJ29401.1
3-methylcrotonyl-CoA carboxylase beta subunit.
  
 
 0.866
SFI34832.1
Homogentisate 1,2-dioxygenase.
  
 0.826
SFJ31670.1
LAO/AO transport system kinase.
 
     0.783
Your Current Organism:
Jannaschia pohangensis
NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.