SFJ39919.1 protein (Jannaschia pohangensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFJ39919.1

L,D-transpeptidase catalytic domain. (179 aa)

Predicted Functional Partners:

SFJ39888.1

0.773

SFJ39954.1

0.773

SFJ39984.1

0.576

SFJ68034.1

0.558

SFI41505.1

0.511

SFI23680.1

0.444

SFJ40008.1

0.428

Your Current Organism:

Jannaschia pohangensis

NCBI taxonomy Id: 390807
Other names: DSM 19073, J. pohangensis, Jannaschia pohangensis Kim et al. 2008, KACC 11609, strain H1-M8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI23680.1	SFJ39919.1	SAMN04488095_0223	SAMN04488095_2744	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.444
SFI23680.1	SFJ68034.1	SAMN04488095_0223	SAMN04488095_3365	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.498
SFI41505.1	SFJ39919.1	SAMN04488095_0772	SAMN04488095_2744	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.511
SFJ39888.1	SFJ39919.1	SAMN04488095_2743	SAMN04488095_2744	Hypothetical protein.	L,D-transpeptidase catalytic domain.	0.773
SFJ39888.1	SFJ39954.1	SAMN04488095_2743	SAMN04488095_2745	Hypothetical protein.	Hypothetical protein.	0.773
SFJ39888.1	SFJ39984.1	SAMN04488095_2743	SAMN04488095_2746	Hypothetical protein.	MAPEG family protein.	0.658
SFJ39888.1	SFJ40008.1	SAMN04488095_2743	SAMN04488095_2747	Hypothetical protein.	Dihydrolipoamide dehydrogenase.	0.428
SFJ39919.1	SFI23680.1	SAMN04488095_2744	SAMN04488095_0223	L,D-transpeptidase catalytic domain.	Murein L,D-transpeptidase YcbB/YkuD.	0.444
SFJ39919.1	SFI41505.1	SAMN04488095_2744	SAMN04488095_0772	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.511
SFJ39919.1	SFJ39888.1	SAMN04488095_2744	SAMN04488095_2743	L,D-transpeptidase catalytic domain.	Hypothetical protein.	0.773
SFJ39919.1	SFJ39954.1	SAMN04488095_2744	SAMN04488095_2745	L,D-transpeptidase catalytic domain.	Hypothetical protein.	0.773
SFJ39919.1	SFJ39984.1	SAMN04488095_2744	SAMN04488095_2746	L,D-transpeptidase catalytic domain.	MAPEG family protein.	0.576
SFJ39919.1	SFJ40008.1	SAMN04488095_2744	SAMN04488095_2747	L,D-transpeptidase catalytic domain.	Dihydrolipoamide dehydrogenase.	0.428
SFJ39919.1	SFJ68034.1	SAMN04488095_2744	SAMN04488095_3365	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.558
SFJ39954.1	SFJ39888.1	SAMN04488095_2745	SAMN04488095_2743	Hypothetical protein.	Hypothetical protein.	0.773
SFJ39954.1	SFJ39919.1	SAMN04488095_2745	SAMN04488095_2744	Hypothetical protein.	L,D-transpeptidase catalytic domain.	0.773
SFJ39954.1	SFJ39984.1	SAMN04488095_2745	SAMN04488095_2746	Hypothetical protein.	MAPEG family protein.	0.576
SFJ39954.1	SFJ40008.1	SAMN04488095_2745	SAMN04488095_2747	Hypothetical protein.	Dihydrolipoamide dehydrogenase.	0.428
SFJ39984.1	SFJ39888.1	SAMN04488095_2746	SAMN04488095_2743	MAPEG family protein.	Hypothetical protein.	0.658
SFJ39984.1	SFJ39919.1	SAMN04488095_2746	SAMN04488095_2744	MAPEG family protein.	L,D-transpeptidase catalytic domain.	0.576