Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpet_0100ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components-like protein. (234 aa)    
Predicted Functional Partners:
Tpet_0101
Hypothetical protein.
       0.773
Tpet_0097
TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB.
       0.753
Tpet_1608
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.743
Tpet_0099
PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
       0.740
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.737
Tpet_0095
Possibly RNA-binding protein and truncated derivatives-like.
       0.737
Tpet_0096
PFAM: aminotransferase, class IV.
       0.737
Tpet_0098
PFAM: CBS domain containing protein.
       0.737
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring.
       0.736
Tpet_1609
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.733
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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