STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpet_0114TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase. (364 aa)    
Predicted Functional Partners:
Tpet_0115
Glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS).
  
 
 0.985
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.927
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.910
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
 0.909
Tpet_0116
PFAM: binding-protein-dependent transport systems inner membrane component.
     
 0.796
Tpet_0117
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.787
Tpet_0119
PFAM: glycoside hydrolase, family 3 domain protein.
 
  
 0.769
Tpet_0120
PFAM: ROK family protein; regulatory protein, ArsR; transcriptional regulator TrmB; Helix-turn-helix, type 11 domain protein.
 
  
 0.708
Tpet_0118
PFAM: extracellular solute-binding protein, family 1.
       0.645
Tpet_1208
PFAM: phosphoribosyltransferase.
  
    0.626
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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