Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Tpet_0959TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase, family 13 domain protein; pullanase-associated protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. (843 aa)    
Predicted Functional Partners:
Tpet_0965
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
 0.988
Tpet_0685
TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
 
 0.987
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
 
 0.986
Tpet_0969
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
 0.983
Tpet_0554
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 0.975
Tpet_1141
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
 
 0.975
Tpet_1581
TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35.
 
 
 0.974
Tpet_0953
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
 0.966
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.945
Tpet_0951
Cellobiose phosphorylase; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated.
     
 0.903
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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