STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpet_1698PFAM: outer membrane chaperone Skp (OmpH). (159 aa)    
Predicted Functional Partners:
Tpet_0472
PFAM: surface antigen (D15); surface antigen variable number repeat protein.
 
  
 0.890
Tpet_1696
PFAM: conserved hypothetical protein 730.
 
     0.882
Tpet_1705
PFAM: alpha/beta hydrolase fold.
 
     0.880
Tpet_1697
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.839
Tpet_1699
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1.
       0.821
Tpet_1700
Hypothetical protein.
       0.821
Tpet_1701
PFAM: peptidase M42 family protein.
       0.821
Tpet_1702
Cellulase; PFAM: peptidase M20; peptidase M42 family protein.
       0.821
Tpet_1703
Peptidase M42 family protein; PFAM: peptidase M18, aminopeptidase I; peptidase M20; peptidase M42 family protein.
       0.796
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
       0.795
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.