Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Smal_0484KEGG: xac:XAC3606 outer membran protein. (121 aa)    
Predicted Functional Partners:
Smal_0485
PFAM: OmpA/MotB domain protein; KEGG: xcb:XC_3638 outer membrane protein.
  
 
 0.824
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.791
Smal_3915
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.791
Smal_3021
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xcb:XC_3201 bacterioferritin.
  
    0.598
Smal_0483
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: xcv:XCV3730 Tfp pilus assembly protein.
       0.539
Smal_0487
PFAM: protein of unknown function DUF465; KEGG: xcb:XC_3637 hypothetical protein.
       0.498
Smal_0486
Hypothetical protein.
       0.463
Smal_1008
PFAM: OsmC family protein; KEGG: xom:XOO_1312 osmotically inducible protein.
   
    0.462
Smal_2314
PFAM: OmpA/MotB domain protein; SmpA/OmlA domain protein; KEGG: bte:BTH_II1488 outer membrane lipoprotein, OmpA/SmpA/OmlA family.
  
 
 0.458
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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