STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_1007PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (132 aa)    
Predicted Functional Partners:
Smal_2265
PFAM: protein of unknown function DUF802; KEGG: bte:BTH_II1149 domain of unknown function (DUF802) family.
 
     0.669
Smal_2267
KEGG: xcb:XC_3784 hypothetical protein.
  
     0.624
Smal_2264
KEGG: xcv:XCV3871 hypothetical protein.
  
     0.623
ihfA
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
 
 0.599
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
    
 
 0.552
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.544
Smal_2539
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: xcb:XC_2644 P-protein.
     
 0.481
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
  
 0.465
Smal_0851
PFAM: beta-lactamase domain protein; KEGG: xac:XAC1096 hypothetical protein.
  
     0.457
Smal_2478
PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: pna:Pnap_4961 UvrD/REP helicase.
   
 
 0.441
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.