STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_1237PFAM: protein of unknown function DUF885; KEGG: xcb:XC_1485 hypothetical protein. (602 aa)    
Predicted Functional Partners:
Smal_0820
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor.
  
     0.550
Smal_1238
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: xcv:XCV2953 hypothetical protein.
       0.540
Smal_1239
KEGG: xcv:XCV2952 putative secreted protein.
       0.540
Smal_0096
KEGG: xcb:XC_0180 hypothetical protein.
  
     0.535
Smal_2663
KEGG: xcb:XC_2828 hypothetical protein.
  
     0.535
Smal_0819
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor.
  
     0.533
Smal_3061
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor.
  
     0.527
Smal_0250
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor.
  
     0.508
Smal_3321
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xoo:XOO0950 TonB-dependent receptor.
  
     0.477
Smal_3556
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3444 TonB-dependent receptor.
  
     0.472
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.