Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smal_1349 | Smal_1350 | Smal_1349 | Smal_1350 | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | KEGG: xac:XAC2465 hypothetical protein. | 0.615 |
Smal_1349 | Smal_1351 | Smal_1349 | Smal_1351 | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | Hypothetical protein. | 0.524 |
Smal_1349 | Smal_1353 | Smal_1349 | Smal_1353 | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | 0.757 |
Smal_1349 | ybeY | Smal_1349 | Smal_1352 | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.890 |
Smal_1350 | Smal_1349 | Smal_1350 | Smal_1349 | KEGG: xac:XAC2465 hypothetical protein. | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | 0.615 |
Smal_1350 | Smal_1351 | Smal_1350 | Smal_1351 | KEGG: xac:XAC2465 hypothetical protein. | Hypothetical protein. | 0.686 |
Smal_1350 | Smal_1353 | Smal_1350 | Smal_1353 | KEGG: xac:XAC2465 hypothetical protein. | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | 0.591 |
Smal_1350 | ybeY | Smal_1350 | Smal_1352 | KEGG: xac:XAC2465 hypothetical protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.601 |
Smal_1351 | Smal_1349 | Smal_1351 | Smal_1349 | Hypothetical protein. | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | 0.524 |
Smal_1351 | Smal_1350 | Smal_1351 | Smal_1350 | Hypothetical protein. | KEGG: xac:XAC2465 hypothetical protein. | 0.686 |
Smal_1351 | Smal_1353 | Smal_1351 | Smal_1353 | Hypothetical protein. | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | 0.639 |
Smal_1351 | ybeY | Smal_1351 | Smal_1352 | Hypothetical protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.639 |
Smal_1353 | Smal_1349 | Smal_1353 | Smal_1349 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein. | 0.757 |
Smal_1353 | Smal_1350 | Smal_1353 | Smal_1350 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | KEGG: xac:XAC2465 hypothetical protein. | 0.591 |
Smal_1353 | Smal_1351 | Smal_1353 | Smal_1351 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | Hypothetical protein. | 0.639 |
Smal_1353 | Smal_3583 | Smal_1353 | Smal_3583 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.585 |
Smal_1353 | clpX | Smal_1353 | Smal_0837 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.674 |
Smal_1353 | cmk | Smal_1353 | Smal_1645 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | KEGG: xcv:XCV2497 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.579 |
Smal_1353 | recO | Smal_1353 | Smal_2973 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.819 |
Smal_1353 | rsfS | Smal_1353 | Smal_2908 | PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.547 |
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