STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_2066KEGG: pha:PSHAa1749 alginate lyase precursor. (479 aa)    
Predicted Functional Partners:
Smal_2067
PFAM: Heparinase II/III family protein; KEGG: sde:Sde_3284 hypothetical protein.
 
  
  0.974
Smal_2068
PFAM: major facilitator superfamily MFS_1; KEGG: spu:767491 similar to CG3036-PA.
 
    0.951
Smal_2069
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0259 short-chain dehydrogenase/reductase SDR.
 
     0.859
Smal_2065
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2991 hypothetical protein.
 
     0.840
Smal_2064
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mmr:Mmar10_0254 transcriptional regulator, GntR family.
 
     0.829
Smal_2071
PFAM: PfkB domain protein; KEGG: xcv:XCV0122 2-keto-3-deoxygluconate kinase.
 
     0.642
Smal_2990
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.593
Smal_2070
PFAM: lipolytic protein G-D-S-L family; KEGG: xcb:XC_0121 hypothetical protein.
       0.541
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.