Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smal_2139Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_0194 nodulation protein W, DNA-binding response regulator. (213 aa)    
Predicted Functional Partners:
Smal_2138
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbr:BB1101 two component sensor kinase.
 
 
 0.969
Smal_1735
PFAM: response regulator receiver; KEGG: xac:XAC1284 two-component system regulatory protein.
 
 
 0.868
Smal_1738
PFAM: MCP methyltransferase CheR-type; KEGG: xcb:XC_3058 chemotaxis protein.
      0.842
Smal_2140
PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein.
       0.773
Smal_1031
KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 
 0.681
Smal_1948
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cvi:CV_2400 sensor protein EvgS precursor.
   
 
 0.666
Smal_0447
KEGG: xcv:XCV3804 two-component system sensor histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.635
Smal_3978
Multi-sensor hybrid histidine kinase; KEGG: xom:XOO_0308 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein.
   
 
 0.629
Smal_0062
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: reu:Reut_B4471 PAS/PAC sensor hybrid histidine kinase.
   
 
 0.570
Smal_0156
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein.
   
 
 0.570
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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