Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smal_2575Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05458 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
Smal_0276
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppg:PputGB1_1427 transcriptional regulator, LysR family.
  
     0.663
Smal_2574
KEGG: lil:LA3260 hypothetical protein.
       0.615
Smal_2346
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family.
  
     0.550
Smal_2306
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1223 putative LysR-family transcriptional regulatory protein.
  
     0.538
Smal_2576
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5639 alcohol dehydrogenase zinc-binding domain protein.
       0.537
Smal_3209
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3457 transcriptional regulator CysB-like protein.
  
     0.536
Smal_1291
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1632 transcriptional regulator, LysR family.
  
     0.515
Smal_2844
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0102 transcriptional regulator, LysR family.
  
     0.504
Smal_2573
PFAM: beta-lactamase; KEGG: eli:ELI_02300 beta-lactamase class C family protein.
       0.474
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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