STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_2809PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_0270 glycoside hydrolase, family 18; Belongs to the glycosyl hydrolase 18 family. (396 aa)    
Predicted Functional Partners:
Smal_3427
PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: cak:Caul_0293 beta-N-acetylhexosaminidase.
 
  
 0.972
Smal_0542
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Fibronectin type III domain protein; SMART: chitinase II; KEGG: cvi:CV_4240 probable chitinase.
  
  
 
0.921
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
   
 
 0.903
Smal_3816
PFAM: ROK family protein; KEGG: spe:Spro_2576 ROK family protein.
     
 0.901
Smal_0976
PFAM: aminoglycoside phosphotransferase; KEGG: xcv:XCV3099 putative phosphotransferase family protein.
     
  0.900
Smal_3878
PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor.
  
     0.660
Smal_3877
PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor.
  
     0.656
Smal_2810
KEGG: dac:Daci_4219 hypothetical protein.
     
 0.527
Smal_1686
PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C7217 GCN5-related N-acetyltransferase.
  
     0.444
Smal_2075
Hypothetical protein; KEGG: sgr:SGR_759 putative secreted serine protease.
  
   
 0.413
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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