STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_2954TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: xcb:XC_2942 serine protease. (947 aa)    
Predicted Functional Partners:
Smal_2672
KEGG: xcv:XCV2430 hypothetical protein.
 
  
 0.870
Smal_0112
PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: xfa:XF2550 outer membrane hemolysin activator protein.
 
  
 0.721
Smal_0096
KEGG: xcb:XC_0180 hypothetical protein.
 
   0.668
Smal_3717
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xac:XAC0482 hypothetical protein.
  
    0.667
Smal_1220
KEGG: xcv:XCV2982 putative secreted protein.
  
     0.663
Smal_1838
KEGG: xfn:XfasM23_0226 hypothetical protein.
  
     0.662
Smal_2442
PFAM: type IV secretory pathway VirB3 family protein; KEGG: xcb:XC_1638 VirB3 protein.
   
    0.648
Smal_1305
PFAM: protein of unknown function DUF692; KEGG: pfo:PflO1_2081 hypothetical protein; Belongs to the UPF0276 family.
   
    0.647
Smal_0043
KEGG: xom:XOO_4252 hypothetical protein.
  
   0.645
Smal_2443
PFAM: Conjugal transfer protein TrbC; KEGG: xcb:XC_1637 VirB2 protein.
   
    0.643
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.