STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_3003Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: xcb:XC_3141 transcriptional regulator AraC/XylS family. (240 aa)    
Predicted Functional Partners:
Smal_1747
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_3410 transcriptional regulator.
  
     0.684
Smal_2081
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1506 transcriptional regulator, AraC family.
  
     0.580
Smal_3002
PFAM: amino acid permease-associated region; KEGG: xcv:XCV3131 amino acid transporter family protein.
       0.553
Smal_2398
Cyclic nucleotide-binding protein; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfl:PFL_5538 transcriptional regulator, AraC family.
  
   0.542
Smal_3004
KEGG: scl:sce9285 hypothetical protein.
       0.542
Smal_2162
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cak:Caul_5108 transcriptional regulator, AraC family.
  
     0.518
Smal_2365
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator.
  
     0.457
Smal_2180
KEGG: xcv:XCV1821 hypothetical protein.
  
     0.428
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.