Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Smal_3205TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0648 TonB-dependent copper receptor. (687 aa)    
Predicted Functional Partners:
Smal_3206
KEGG: xcv:XCV3452 putative secreted protein.
  
    0.624
Smal_0202
PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_0269 integral membrane protein.
  
     0.526
Smal_3289
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
 
 
 0.513
Smal_1115
PFAM: protein of unknown function DUF461; KEGG: xcv:XCV1281 hypothetical protein.
 
    0.502
Smal_3798
KEGG: pau:PA14_04020 hypothetical protein.
  
     0.460
Smal_2672
KEGG: xcv:XCV2430 hypothetical protein.
  
 
   0.418
Smal_3202
PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3317 acetyltransferase.
       0.415
Smal_3203
PFAM: acriflavin resistance protein; KEGG: xcb:XC_0996 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.415
Smal_3204
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3444 membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.415
Smal_1326
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:PflO1_2583 TonB-dependent siderophore receptor.
  
    0.407
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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