STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_3205TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0648 TonB-dependent copper receptor. (687 aa)    
Predicted Functional Partners:
Smal_3206
KEGG: xcv:XCV3452 putative secreted protein.
  
    0.604
Smal_0202
PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_0269 integral membrane protein.
  
     0.526
Smal_2672
KEGG: xcv:XCV2430 hypothetical protein.
  
 
 
 0.509
Smal_3289
Azurin; Transfers electrons from cytochrome c551 to cytochrome oxidase.
  
 
 
 0.509
Smal_3798
KEGG: pau:PA14_04020 hypothetical protein.
  
     0.460
Smal_2220
PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein.
  
   0.450
Smal_3202
PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3317 acetyltransferase.
       0.415
Smal_3203
PFAM: acriflavin resistance protein; KEGG: xcb:XC_0996 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.415
Smal_3204
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3444 membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.415
Smal_1326
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:PflO1_2583 TonB-dependent siderophore receptor.
  
    0.405
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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