node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smal_0480 | Smal_1646 | Smal_0480 | Smal_1646 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.728 |
Smal_0480 | Smal_3886 | Smal_0480 | Smal_3886 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | 0.831 |
Smal_0480 | rnd | Smal_0480 | Smal_2762 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.662 |
Smal_0480 | rpsD | Smal_0480 | Smal_0779 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.755 |
Smal_0480 | rpsK | Smal_0480 | Smal_0778 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.688 |
Smal_0480 | rpsQ | Smal_0480 | Smal_0765 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.493 |
Smal_1646 | Smal_0480 | Smal_1646 | Smal_0480 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.728 |
Smal_1646 | Smal_3886 | Smal_1646 | Smal_3886 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | 0.898 |
Smal_1646 | rhlB | Smal_1646 | Smal_3674 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.728 |
Smal_1646 | rnd | Smal_1646 | Smal_2762 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.971 |
Smal_1646 | rpsD | Smal_1646 | Smal_0779 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
Smal_1646 | rpsK | Smal_1646 | Smal_0778 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
Smal_1646 | rpsQ | Smal_1646 | Smal_0765 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
Smal_2344 | Smal_2345 | Smal_2344 | Smal_2345 | PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase. | PFAM: Ankyrin; KEGG: bav:BAV1818 ankyrin repeat-containing exported protein. | 0.815 |
Smal_2344 | Smal_3886 | Smal_2344 | Smal_3886 | PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase. | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | 0.809 |
Smal_2345 | Smal_2344 | Smal_2345 | Smal_2344 | PFAM: Ankyrin; KEGG: bav:BAV1818 ankyrin repeat-containing exported protein. | PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase. | 0.815 |
Smal_2345 | Smal_3886 | Smal_2345 | Smal_3886 | PFAM: Ankyrin; KEGG: bav:BAV1818 ankyrin repeat-containing exported protein. | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | 0.808 |
Smal_3886 | Smal_0480 | Smal_3886 | Smal_0480 | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.831 |
Smal_3886 | Smal_1646 | Smal_3886 | Smal_1646 | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.898 |
Smal_3886 | Smal_2344 | Smal_3886 | Smal_2344 | KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases. | PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase. | 0.809 |