Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tmel_0804PFAM: NADH-ubiquinone oxidoreductase, chain 4L. (107 aa)    
Predicted Functional Partners:
Tmel_0805
PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.994
Tmel_1210
PFAM: cation antiporter.
 
 
 0.978
Tmel_1211
PFAM: multiple resistance and pH regulation protein F.
 
 
 0.971
Tmel_1214
PFAM: Na+/H+ antiporter MnhB subunit-related protein.
 
 
 0.970
Tmel_1406
PFAM: Na+/H+ antiporter MnhB subunit-related protein.
 
 
 0.968
Tmel_1216
PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.954
Tmel_1212
TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit.
 
 
 0.941
Tmel_1217
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I).
 
 
 0.930
Tmel_1789
Hypothetical protein.
  
 
 0.903
Tmel_1787
Hypothetical protein.
  
 
 0.868
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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