Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tmel_1007PFAM: protein of unknown function DUF1063; Belongs to the UPF0597 family. (397 aa)    
Predicted Functional Partners:
Tmel_1006
PP-loop domain protein; PFAM: phosphoadenosine phosphosulfate reductase; PP-loop domain protein; Belongs to the TtcA family.
       0.816
Tmel_1005
Hypothetical protein.
       0.809
Tmel_1003
PFAM: AMMECR1 domain protein.
       0.791
Tmel_1004
Hypothetical protein.
       0.788
Tmel_1008
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type.
       0.596
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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