STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmel_1016Glycoside hydrolase, family 85; PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase, family 85. (880 aa)    
Predicted Functional Partners:
Tmel_1011
PFAM: glycoside hydrolase, family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase, family 38, central region.
 
  
 0.895
Tmel_1017
PFAM: extracellular solute-binding protein, family 1.
 
     0.795
Tmel_1013
PFAM: glycosidase, PH1107-related.
 
     0.640
Tmel_1226
PFAM: glycoside hydrolase, family 20.
 
   
 0.628
Tmel_1015
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.615
Tmel_1012
PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator.
  
    0.607
Tmel_1014
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.607
Tmel_1266
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.492
Tmel_1019
Hypothetical protein.
       0.467
Tmel_1018
PFAM: MMPL domain protein.
       0.433
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.