STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmel_1642PFAM: YhhN family protein. (371 aa)    
Predicted Functional Partners:
Tmel_1643
PFAM: protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.746
Tmel_1291
Hypothetical protein.
  
     0.656
Tmel_1641
Hypothetical protein.
 
     0.652
Tmel_0856
Hypothetical protein.
  
     0.596
Tmel_0382
PFAM: ABC-2 type transporter.
  
     0.486
Tmel_1105
SMART: AAA ATPase.
  
     0.471
Tmel_0232
PFAM: phospholipase D/Transphosphatidylase.
  
     0.448
Tmel_1103
PFAM: Domain of unknown function DUF1814.
  
     0.447
Tmel_1532
PFAM: PEGA domain protein.
  
     0.423
Tmel_0136
PFAM: alpha-2-macroglobulin domain protein.
 
     0.413
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.