STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmel_1659TIGRFAM: CRISPR-associated protein, Cmr3 family. (323 aa)    
Predicted Functional Partners:
Tmel_1658
TIGRFAM: CRISPR-associated protein, Crm2 family.
 
 
 
 0.987
Tmel_1657
TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324.
 
 
   0.967
Tmel_1660
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324.
 
   
 0.956
Tmel_1662
TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324.
 
   
 0.946
Tmel_1661
TIGRFAM: CRISPR-associated protein, Cmr5 family.
     
 0.809
Tmel_1670
Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: metal-dependent phosphohydrolase, HD sub domain.
   
 
 0.765
Tmel_0445
Hypothetical protein.
  
     0.759
Tmel_1318
PFAM: peptidase C1A, papain.
  
     0.758
Tmel_0992
Uncharacterized protein-like protein.
  
     0.755
Tmel_1446
PFAM: Fibronectin, type III domain protein.
  
     0.739
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.