STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0026PFAM: CBS domain containing protein; KEGG: stp:Strop_0022 putative signal-transduction protein with CBS domains. (141 aa)    
Predicted Functional Partners:
Sare_1530
KEGG: stp:Strop_1579 hypothetical protein.
   
  
 0.719
Sare_2354
PFAM: peptidase M50; KEGG: stp:Strop_2237 peptidase M50; Belongs to the peptidase M50B family.
 
    0.698
Sare_1527
KEGG: stp:Strop_1576 hypothetical protein.
   
  
 0.681
Sare_4850
PFAM: PfkB domain protein; KEGG: sma:SAV3689 putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.652
Sare_0191
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0176 major facilitator superfamily MFS_1.
   
  
 0.641
Sare_3142
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0213 putative nitrate/nitrite transporter protein.
   
  
 0.641
Sare_0025
PFAM: Fe-S metabolism associated SufE; KEGG: stp:Strop_0021 Fe-S metabolism associated SufE.
       0.472
Sare_0027
PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_0023 lipolytic enzyme, G-D-S-L family.
       0.447
Sare_0024
PFAM: DSBA oxidoreductase; KEGG: stp:Strop_0020 DsbA oxidoreductase.
       0.441
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.437
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.