STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0028PFAM: Rhodanese domain protein; KEGG: kra:Krad_3079 rhodanese domain protein. (297 aa)    
Predicted Functional Partners:
Sare_1421
PFAM: Rhodanese domain protein; KEGG: stp:Strop_1460 rhodanese domain protein.
  
  
0.929
Sare_4085
PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: stp:Strop_3704 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein.
    
 0.916
Sare_1106
PFAM: aminotransferase class V; KEGG: stp:Strop_1213 aminotransferase, class V.
    
 0.911
Sare_1158
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: stp:Strop_1267 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme.
 
 
 0.911
Sare_3533
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: stp:Strop_3301 aminotransferase, class V.
    
 0.911
Sare_4083
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 0.910
Sare_0340
PFAM: Rhodanese domain protein; KEGG: stp:Strop_0296 rhodanese domain protein.
  
  
 
0.904
Sare_2245
PFAM: DoxX family protein; KEGG: stp:Strop_2102 DoxX family protein.
     
  0.900
Sare_2784
PFAM: aminotransferase class I and II; KEGG: stp:Strop_2586 aminotransferase, class I and II.
     
  0.900
Sare_3268
PFAM: NADPH-dependent FMN reductase; KEGG: stp:Strop_3042 NADPH-dependent FMN reductase.
     
  0.900
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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