STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0042PFAM: protein of unknown function DUF397; KEGG: stp:Strop_0037 protein of unknown function DUF397. (73 aa)    
Predicted Functional Partners:
Sare_0041
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_0036 helix-turn-helix domain protein.
 
   
 0.927
Sare_2968
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1518 helix-turn-helix domain protein.
 
     0.705
Sare_1729
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1746 helix-turn-helix domain protein.
 
   
 0.700
Sare_1300
SMART: helix-turn-helix domain protein; KEGG: stp:Strop_1349 hypothetical protein.
  
     0.683
Sare_2231
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_2090 protein of unknown function DUF397.
  
     0.680
Sare_2602
KEGG: stp:Strop_2449 helix-turn-helix domain protein.
  
     0.678
Sare_1160
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1270 helix-turn-helix domain protein.
 
     0.677
Sare_3365
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_3742 helix-turn-helix domain protein.
  
     0.673
Sare_0600
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1133 helix-turn-helix domain protein.
  
     0.667
Sare_2232
KEGG: stp:Strop_2091 hypothetical protein.
 
     0.638
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.