STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0075PFAM: peptidase M4 thermolysin; Proprotein convertase P; peptidase M20; peptidase M28; Peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein. (947 aa)    
Predicted Functional Partners:
Sare_1483
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
  
  
 0.750
Sare_4858
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_2456 chitin-binding, domain 3 protein.
  
  
 0.706
Sare_1632
PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_1647 chitin-binding, domain 3 protein.
  
  
 0.686
Sare_1669
KEGG: kra:Krad_3740 secreted protein.
 
  
 0.610
Sare_1701
PFAM: peptidase M14 carboxypeptidase A; KEGG: stp:Strop_1703 peptidase M14, carboxypeptidase A.
 
   
 0.609
Sare_3485
Chitinase; KEGG: stp:Strop_3258 glycoside hydrolase, family 18; PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.591
Sare_4225
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: stp:Strop_3835 peptidase M1, membrane alanine aminopeptidase.
 
 
 
 0.552
Sare_0044
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; proteinase inhibitor I9 subtilisin propeptide; KEGG: stp:Strop_0039 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
   
0.534
Sare_1596
KEGG: sco:SCO2868 hypothetical protein.
  
     0.534
Sare_0293
KEGG: stp:Strop_0254 microtubule-severing ATPase; PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
    
 0.533
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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