STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0085PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: stp:Strop_0088 stage II sporulation E family protein. (375 aa)    
Predicted Functional Partners:
Sare_4413
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: stp:Strop_4032 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.850
Sare_4412
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: stp:Strop_4031 hypothetical protein.
 
 
 0.846
Sare_4524
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: stp:Strop_4104 stage II sporulation E family protein.
 
 
0.826
Sare_4521
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: stp:Strop_4101 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.766
Sare_4078
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: stp:Strop_3698 hypothetical protein.
 
 
 0.754
Sare_4335
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: stp:Strop_3943 diguanylate cyclase.
  
  
 0.741
Sare_4105
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: stp:Strop_3724 ATP-binding region, ATPase domain protein domain protein.
  
 
 0.709
Sare_0870
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: stp:Strop_0927 diguanylate cyclase.
  
  
 0.701
Sare_3513
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: stp:Strop_3281 diguanylate cyclase.
  
  
 0.701
Sare_0888
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: stp:Strop_0946 radical SAM domain protein.
   
  
 0.687
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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