STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0091KEGG: stp:Strop_0094 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Sare_0092
KEGG: stp:Strop_0095 hypothetical protein.
 
     0.954
Sare_0090
PFAM: ThiJ/PfpI domain protein; KEGG: stp:Strop_0093 ThiJ/PfpI domain protein.
 
     0.854
Sare_0089
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: stp:Strop_0092 transcriptional regulator, AraC family.
 
     0.657
Sare_1583
KEGG: stp:Strop_1051 hypothetical protein.
  
     0.531
Sare_1926
PFAM: Bifunctional DNA primase/polymerase; KEGG: stp:Strop_0062 hypothetical protein.
  
     0.523
Sare_0088
PFAM: Phosphoglycerate mutase; KEGG: stp:Strop_0091 putative phosphohistidine phosphatase, SixA.
       0.494
Sare_3165
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_2944 regulatory protein, TetR.
  
     0.486
Sare_4965
PFAM: TadE family protein; KEGG: stp:Strop_4452 TadE family protein.
  
     0.486
Sare_1568
KEGG: sen:SACE_6000 cell division FtsK/SpoIIIE.
  
     0.472
Sare_3163
Ferredoxin; KEGG: sco:SCO7676 ferredoxin.
  
     0.442
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.