STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0095TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: stp:Strop_0098 UreA amidolyase related protein. (311 aa)    
Predicted Functional Partners:
Sare_0094
PFAM: Allophanate hydrolase subunit 1; KEGG: stp:Strop_0097 allophanate hydrolase subunit 1.
 
 0.999
Sare_0096
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.997
Sare_0031
PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_0025 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.914
Sare_0792
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_0849 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.914
Sare_2687
PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_2503 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.914
Sare_4768
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_4328 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.913
Sare_4608
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_0496 regulatory protein, IclR.
 
    0.704
Sare_1148
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_1257 regulatory protein, IclR.
  
    0.659
Sare_4448
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_4050 regulatory protein, IclR.
  
    0.659
Sare_4660
Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; KEGG: stp:Strop_4223 regulatory protein, IclR.
  
    0.659
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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