STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0124PFAM: protein of unknown function DUF350; KEGG: sen:SACE_0457 hypothetical protein. (140 aa)    
Predicted Functional Partners:
speE
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.962
Sare_0121
KEGG: sen:SACE_0460 hypothetical protein.
 
     0.952
Sare_0122
KEGG: sco:SCO3656 hypothetical protein.
 
     0.921
Sare_0123
KEGG: sen:SACE_0459 hypothetical protein.
       0.801
Sare_0125
KEGG: sen:SACE_0458 hypothetical protein.
       0.761
Sare_0127
KEGG: stp:Strop_0122 hypothetical protein.
       0.522
Sare_4292
PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_2119 hypothetical protein.
  
     0.471
clpB
ATPase AAA-2 domain protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
       0.455
Sare_0250
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_2698 hypothetical protein.
  
     0.420
Sare_0128
KEGG: stp:Strop_0123 hypothetical protein.
       0.409
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.