STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0129PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: stp:Strop_0124 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (269 aa)    
Predicted Functional Partners:
Sare_0128
KEGG: stp:Strop_0123 hypothetical protein.
       0.773
Sare_2959
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0374 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.713
Sare_0127
KEGG: stp:Strop_0122 hypothetical protein.
 
     0.674
Sare_2830
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2633 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.673
Sare_0671
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0725 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.664
Sare_0583
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dra:DR_1467 short chain dehydrogenase.
 
     0.588
Sare_2205
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_2399 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.579
Sare_2801
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2602 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.567
Sare_2833
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_2636 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.556
pyrE
Phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.519
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.