STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0141PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0135 major facilitator superfamily MFS_1. (478 aa)    
Predicted Functional Partners:
Sare_0506
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: stp:Strop_0418 major facilitator superfamily MFS_1.
  
     0.729
Sare_0236
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0208 hypothetical protein.
  
     0.645
Sare_4122
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_3741 major facilitator superfamily MFS_1.
  
     0.627
Sare_0142
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_0136 acyl-CoA dehydrogenase domain protein.
       0.531
Sare_0143
PFAM: Sterol-binding domain protein; KEGG: stp:Strop_0137 sterol-binding domain protein.
       0.531
Sare_3887
KEGG: stp:Strop_3512 GCN5-related N-acetyltransferase.
   
    0.429
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.