STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0146PFAM: MaoC domain protein dehydratase; KEGG: stp:Strop_0140 MaoC domain protein dehydratase. (306 aa)    
Predicted Functional Partners:
Sare_0147
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0141 short-chain dehydrogenase/reductase SDR.
 
  0.983
Sare_0148
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: stp:Strop_0142 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.949
Sare_0145
PFAM: SNARE associated Golgi protein; KEGG: stp:Strop_0139 uncharacterized membrane-associated protein-like protein.
       0.641
Sare_2202
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.520
Sare_4366
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_3981 acyl-CoA dehydrogenase domain protein.
 
  0.491
Sare_2220
PFAM: fatty acid desaturase; KEGG: stp:Strop_2077 fatty acid desaturase.
  
     0.439
Sare_1511
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_1562 acyl-CoA dehydrogenase domain protein.
 
  0.411
Sare_1468
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: stp:Strop_1526 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.409
Sare_2219
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: stp:Strop_2076 oxidoreductase FAD-binding domain protein.
 
  
 0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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