STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0167KEGG: stp:Strop_0158 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Sare_3627
KEGG: stp:Strop_3385 hypothetical protein.
  
     0.671
Sare_0162
KEGG: tfu:Tfu_2746 hypothetical protein.
 
     0.566
Sare_4519
PFAM: Phosphoglycerate mutase; KEGG: stp:Strop_4099 phosphoglycerate mutase.
  
     0.565
Sare_3433
KEGG: stp:Strop_3207 hypothetical protein.
  
     0.548
Sare_0168
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: stp:Strop_0159 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.547
Sare_1438
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: stp:Strop_1473 type III restriction enzyme, res subunit.
  
     0.546
Sare_0005
PFAM: protein of unknown function DUF721; KEGG: stp:Strop_0006 protein of unknown function DUF721.
  
     0.512
Sare_1447
KEGG: stp:Strop_1482 hypothetical protein.
  
     0.465
Sare_3246
KEGG: stp:Strop_3020 hypothetical protein.
  
     0.464
Sare_3846
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: stp:Strop_3467 DNA polymerase III, delta subunit.
  
     0.460
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.