STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0182KEGG: stp:Strop_0169 hypothetical protein. (292 aa)    
Predicted Functional Partners:
Sare_2208
Carnitine O-acetyltransferase; PFAM: acyltransferase ChoActase/COT/CPT family; KEGG: stp:Strop_2064 carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family.
 
     0.817
Sare_2209
KEGG: stp:Strop_2065 hypothetical protein.
 
     0.817
Sare_0936
KEGG: stp:Strop_1435 hypothetical protein.
  
     0.575
Sare_0600
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1133 helix-turn-helix domain protein.
  
     0.564
Sare_0933
KEGG: stp:Strop_1434 hypothetical protein.
  
     0.563
Sare_1397
KEGG: stp:Strop_1433 hypothetical protein.
  
     0.563
Sare_2923
KEGG: stp:Strop_1717 hypothetical protein.
 
     0.563
Sare_3956
KEGG: stp:Strop_3577 hypothetical protein.
  
     0.556
Sare_3349
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: stp:Strop_3119 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.555
Sare_2450
PFAM: UbiC transcription regulator-associated domain protein; KEGG: stp:Strop_2328 UbiC transcription regulator-associated domain protein.
  
     0.548
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.