STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0188PFAM: Vitamin K epoxide reductase; KEGG: stp:Strop_0174 vitamin K epoxide reductase. (211 aa)    
Predicted Functional Partners:
Sare_0187
PFAM: DSBA oxidoreductase; KEGG: stp:Strop_0173 DsbA oxidoreductase.
 
  
 0.939
Sare_0189
Hypothetical protein.
       0.651
Sare_0186
PFAM: copper resistance D domain protein; KEGG: stp:Strop_0172 copper resistance D domain protein.
 
     0.616
Sare_3635
PFAM: DSBA oxidoreductase; KEGG: stp:Strop_3392 DsbA oxidoreductase.
 
  
 0.570
Sare_0184
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: stp:Strop_0171 cation diffusion facilitator family transporter.
       0.501
Sare_0185
Hypothetical protein.
       0.470
Sare_3179
KEGG: stp:Strop_2956 hypothetical protein.
  
     0.455
Sare_4518
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_4098 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
   
 
 0.450
Sare_1010
PFAM: DSBA oxidoreductase; KEGG: stp:Strop_1120 DsbA oxidoreductase.
  
  
 0.416
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.