STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0214KEGG: sco:SCO5420 cholesterol esterase. (203 aa)    
Predicted Functional Partners:
Sare_0215
KEGG: tfu:Tfu_2330 hypothetical protein.
 
     0.907
Sare_0523
KEGG: stp:Strop_0436 hypothetical protein.
  
     0.571
Sare_0122
KEGG: sco:SCO3656 hypothetical protein.
 
     0.556
Sare_2736
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO7652 acetyltransferase.
  
     0.541
Sare_3201
PFAM: membrane-bound metal-dependent hydrolase; KEGG: stp:Strop_2977 membrane-bound metal-dependent hydrolase.
  
     0.511
Sare_1373
PFAM: membrane-bound metal-dependent hydrolase; KEGG: sma:SAV1574 integral membrane protein.
  
     0.445
Sare_4645
KEGG: sen:SACE_3171 hypothetical protein.
  
     0.437
Sare_1947
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tfu:Tfu_1244 helix-turn-helix motif.
  
     0.420
Sare_0213
KEGG: stp:Strop_0195 hypothetical protein.
       0.412
Sare_3314
KEGG: stp:Strop_3087 hypothetical protein.
  
     0.412
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.