STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0218KEGG: ade:Adeh_3412 secretion protein HlyD. (449 aa)    
Predicted Functional Partners:
Sare_0223
PFAM: protein of unknown function DUF214; KEGG: ace:Acel_1452 protein of unknown function DUF214.
 
  
 0.966
Sare_0412
PFAM: protein of unknown function DUF214; KEGG: kra:Krad_1870 protein of unknown function DUF214.
 
  
 0.937
Sare_0222
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ace:Acel_1451 ABC transporter related.
 
 
 0.892
Sare_0299
Hypothetical protein.
  
 
 0.757
Sare_5073
KEGG: stp:Strop_3165 hypothetical protein.
  
 
 0.757
Sare_4186
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0530 ABC transporter related.
  
 
 0.725
Sare_4885
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4410 ABC transporter related.
  
 
 0.725
Sare_0132
PFAM: SNARE associated Golgi protein; KEGG: stp:Strop_0127 uncharacterized membrane-associated protein-like protein.
   
    0.700
Sare_0221
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ace:Acel_1450 efflux transporter, RND family, MFP subunit.
 
  
0.695
Sare_0410
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: kra:Krad_1868 efflux transporter, RND family, MFP subunit.
  
     0.689
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.