STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_0286KEGG: stp:Strop_0245 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3. (370 aa)    
Predicted Functional Partners:
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
 0.959
Sare_0288
PFAM: sugar isomerase (SIS); KEGG: stp:Strop_0247 sugar isomerase (SIS).
 
 
 0.949
Sare_3210
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sen:SACE_0495 ATPase, BadF/BadG/BcrA/BcrD type.
 
  
 0.943
Sare_4088
PFAM: sugar isomerase (SIS); KEGG: stp:Strop_3707 glutamine--fructose-6-phosphate transaminase (isomerizing).
    
 0.942
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.942
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.912
Sare_0287
PFAM: ROK family protein; KEGG: stp:Strop_0246 ROK family protein.
 
  
 0.861
Sare_0907
KEGG: stp:Strop_0970 hypothetical protein.
  
    0.801
Sare_0289
PFAM: regulatory protein DeoR; KEGG: stp:Strop_0248 transcriptional regulator, DeoR family.
 
    0.731
Sare_0447
KEGG: stp:Strop_0376 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
  
  
 0.672
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.